| Boss | Super Family Computer | Game Boy Advance |
| Wingrapter |
  |
  |
| Karl Boss |
 |
 |
| Siren |
  |
  |
| Magissa
Faltzer |
  |
  |
| Shiva IceComandr |
  |
  |
| Garula |
 |
 |
| LiqudFlame |
 
  |
    |
| Sergeant Karnak Iron Claw |
 
 |
|
| Ifrit |
|
 |
| Biblos |
 |
 |
| Ramuh |
 |
 |
| Sandworm |
 |
 |
| Clay Claw |
 |
 |
| Adamantaim |
 |
 |
| FlameThrow |
 |
 |
| Rocket Gun |
 |
 |
| Rocket Gun |
|
|
| FlameThrow |
|
|
| Soul Gun
|
 
  |
    |
| Archeoavis |
|
 |
| Titan |
 |
 |
| Byurobolos |
 |
 |
| KimaBrain |
 |
 |
| Abductor |
 |
 |
| Gilgamesh |
 |
 |
| Gilgamesh |
|
|
|
Tyrasaurus |
 |
 |
| Golem (Not An Enemy) |
 |
 |
| Drgn Grass Drgn Bulb |
|
  |
| Gilgamesh
Enkidoh |
|
 |
| Atomos |
 |
 |
| (Seal Guardian) Earth Fire Water Wind |
 |
 |
| X-Death |
 |
 |
| Shoat |
 |
 |
| Gilgame |
 |
 |
| Carbuncle |
 |
 |
| Gilgamesh |
|
 |
| X-Death |
|
|
| Antolyon |
 |
 |
| Gargoyle |
 |
 |
| Mellusion |
 |
 |
| ShieldDrgn |
 |
 |
| X-DethSoul |
 |
 |
| Odin |
 |
 |
| Gargoyle |
|
|
| Stoker |
 |
 |
| Minitaurus |
|
 |
| Omniscient |
|
 |
| Triton Nergade Phobos |
 
 |
   |
| Gogo |
 |
 |
| Bahamut |
 |
 |
| Leviathan |
 |
 |
| WoodSprite |
 |
 |
| Omega |
 |
 |
| Apprehendr |
 |
 |
| Azulmagia |
|
 |
| Alte Roit JuraAvis |
  |
  |
| Catastroph |
 |
 |
| Halycanos |
 |
 |
| Twin Tania |
 |
 |
| Gilgamesh |
 |
 |
| Shinryu |
 |
 |
| Necrophobe
|
  |
  |
| X-Death |
 |
 |
| Neo X-Deth |
 |
 |
| Grand Aevis |
 |
|
| Archeodemon |
 |
|
Guardian
Launcher |
    |
|
| Omega Mk.II |
 |
|
| Neo Shinryu |
 |
|
| Enuo |
 |
